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Structure of D-Leu-D-Phe-2-Abz-D-Ala at 0.64 Angstrom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 evaporation from methanol/ethanol mixture
Crystal Properties Matthews coefficient Solvent content 1.35 9.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 12.242 α = 90 b = 15.554 β = 90 c = 26.67 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.71076 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.64 13.44 85.2 0.113 0.033 0.99 22 13.8 4820
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.64 0.65 15.2 0.123 0.068 0.971 7.7 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 0.64 13.44 4569 251 85.23 0.08637 0.0862 0.0861 0.0901 0.0906 RANDOM 3.219
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 13.12 r_sphericity_bonded 4.534 r_rigid_bond_restr 4.205 r_chiral_restr 2.578 r_angle_refined_deg 2.33 r_mcangle_it 1.909 r_mcangle_other 1.812 r_angle_other_deg 1.454 r_mcbond_other 1.172 r_long_range_B_refined 1.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 13.12 r_sphericity_bonded 4.534 r_rigid_bond_restr 4.205 r_chiral_restr 2.578 r_angle_refined_deg 2.33 r_mcangle_it 1.909 r_mcangle_other 1.812 r_angle_other_deg 1.454 r_mcbond_other 1.172 r_long_range_B_refined 1.151 r_long_range_B_other 1.142 r_mcbond_it 1.112 r_scangle_other 0.882 r_scbond_it 0.625 r_scbond_other 0.622 r_gen_planes_refined 0.037 r_bond_refined_d 0.023 r_gen_planes_other 0.013 r_bond_other_d 0.004 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 34 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXS phasing