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Engineered tryptophan synthase b-subunit from Pyrococcus furiosus, PfTrpB4D11 with Trp non-covalently bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.85 298 15-25% PEG3350 and 0.1 M Na HEPES pH 7.85
Crystal Properties Matthews coefficient Solvent content 2.13 42.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.682 α = 90 b = 109.921 β = 90 c = 160.267 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 40 99.9 0.047 0.999 11.4 6.7 106192
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2 99.9 1.338 0.36 0.8 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.97 40 100105 5311 99.21 0.21713 0.21536 0.2196 0.25089 0.2523 RANDOM 46.395
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 0.17 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.242 r_dihedral_angle_4_deg 13.862 r_dihedral_angle_3_deg 12.684 r_dihedral_angle_1_deg 5.625 r_long_range_B_refined 4.892 r_long_range_B_other 4.883 r_angle_refined_deg 1.201 r_angle_other_deg 0.898 r_mcangle_it 0.312 r_mcangle_other 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.242 r_dihedral_angle_4_deg 13.862 r_dihedral_angle_3_deg 12.684 r_dihedral_angle_1_deg 5.625 r_long_range_B_refined 4.892 r_long_range_B_other 4.883 r_angle_refined_deg 1.201 r_angle_other_deg 0.898 r_mcangle_it 0.312 r_mcangle_other 0.312 r_scangle_other 0.209 r_mcbond_it 0.169 r_mcbond_other 0.169 r_scbond_it 0.112 r_scbond_other 0.111 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11518 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing