☰ Navigation Tabs
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and succinate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 1.0 M succinic acid, 0.1 M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 1.85 33.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.844 α = 90 b = 66.751 β = 109.27 c = 62.922 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0331 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 29.097 83.5 0.032 0.044 0.999 12.36 1.729 36373 -3 27.472
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.57 40.4 0.969 1.353 0.455 0.76 1.328
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.67 29.097 34539 1834 99.03 0.1817 0.1808 0.1996 0.2015 RANDOM 21.254
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -2.05 0.43 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.521 r_dihedral_angle_4_deg 14.133 r_dihedral_angle_3_deg 12.584 r_dihedral_angle_1_deg 5.768 r_angle_refined_deg 1.13 r_angle_other_deg 0.75 r_chiral_restr 0.061 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.521 r_dihedral_angle_4_deg 14.133 r_dihedral_angle_3_deg 12.584 r_dihedral_angle_1_deg 5.768 r_angle_refined_deg 1.13 r_angle_other_deg 0.75 r_chiral_restr 0.061 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2636 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 21
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing