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Crystal structure of GlcNAc Inducible Gene 2, GIG2 (DUF1479) from Candida albicans
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 25% PEG 6000, 0.1M Tris pH 8.0, 0.1M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.24 45.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.652 α = 90 b = 54.545 β = 105.61 c = 74.85 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 72.09 99 0.1 17.4 3.9 52149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.75 1.001
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2CSG 1.69 72.09 49560 2581 99.33 0.18223 0.18054 0.21623 0.2108 RANDOM 22.728
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.79 -1.45 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.913 r_dihedral_angle_4_deg 21.707 r_dihedral_angle_3_deg 13.042 r_dihedral_angle_1_deg 6.486 r_long_range_B_refined 6.212 r_long_range_B_other 6.183 r_scangle_other 4.899 r_scbond_it 3.209 r_scbond_other 3.208 r_mcangle_other 2.855
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.913 r_dihedral_angle_4_deg 21.707 r_dihedral_angle_3_deg 13.042 r_dihedral_angle_1_deg 6.486 r_long_range_B_refined 6.212 r_long_range_B_other 6.183 r_scangle_other 4.899 r_scbond_it 3.209 r_scbond_other 3.208 r_mcangle_other 2.855 r_mcangle_it 2.853 r_mcbond_it 2.065 r_mcbond_other 2.055 r_angle_refined_deg 1.891 r_angle_other_deg 1.07 r_chiral_restr 0.131 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3641 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing