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Crystal Structure of HEWL in complex with Phenylethyl alcohol (in the aroma form) after 5 hours under fibrillation conditions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DPX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 2 M NaCl, 10% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.02 39.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.667 α = 90 b = 78.667 β = 90 c = 37.382 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9792 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 37 100 0.16 16.7 10 7282
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 0.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1dpx 2.1 37 6896 353 99.9 0.18124 0.17798 0.1868 0.24628 0.2493 RANDOM 11.023
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.389 r_dihedral_angle_4_deg 17.542 r_dihedral_angle_3_deg 15.6 r_dihedral_angle_1_deg 6.207 r_long_range_B_refined 4.985 r_long_range_B_other 4.733 r_scangle_other 2.141 r_angle_refined_deg 1.805 r_angle_other_deg 1.804 r_mcangle_other 1.516
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.389 r_dihedral_angle_4_deg 17.542 r_dihedral_angle_3_deg 15.6 r_dihedral_angle_1_deg 6.207 r_long_range_B_refined 4.985 r_long_range_B_other 4.733 r_scangle_other 2.141 r_angle_refined_deg 1.805 r_angle_other_deg 1.804 r_mcangle_other 1.516 r_mcangle_it 1.515 r_scbond_it 1.29 r_scbond_other 1.289 r_mcbond_it 0.878 r_mcbond_other 0.875 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling SCALA data scaling PHASER phasing