☰ Navigation Tabs
Crystal structure of JAK3 in complex with peficitinib
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 buffer, salt, precipitant
Crystal Properties Matthews coefficient Solvent content 2.72 54.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.076 α = 90 b = 114.644 β = 97.65 c = 107.358 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2015-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 106.4 94.8 0.063 12.16 2 36956
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.92 91.9 0.437 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.67 106.4 36123 822 94.9 0.269 0.269 0.268 0.326 0.3253 RANDOM 39.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.22 -0.22 -2.68 4.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.661 r_dihedral_angle_3_deg 14.964 r_dihedral_angle_4_deg 14.692 r_dihedral_angle_1_deg 5.936 r_scangle_it 4.913 r_scbond_it 3.392 r_mcangle_it 2.219 r_mcbond_it 1.674 r_angle_refined_deg 1.248 r_angle_other_deg 0.957
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.661 r_dihedral_angle_3_deg 14.964 r_dihedral_angle_4_deg 14.692 r_dihedral_angle_1_deg 5.936 r_scangle_it 4.913 r_scbond_it 3.392 r_mcangle_it 2.219 r_mcbond_it 1.674 r_angle_refined_deg 1.248 r_angle_other_deg 0.957 r_mcbond_other 0.304 r_nbd_refined 0.181 r_nbtor_refined 0.162 r_symmetry_vdw_other 0.148 r_nbd_other 0.138 r_xyhbond_nbd_refined 0.119 r_symmetry_vdw_refined 0.113 r_nbtor_other 0.076 r_symmetry_hbond_refined 0.071 r_chiral_restr 0.068 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8665 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling