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The crystal structure of vaccinia virus A26 (residues 1-397)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 298 0.2 M sodium acetate trihydrate, 0.1 M Tris pH 8.5, 30 % w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.95 36.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.38 α = 90 b = 80.718 β = 113.8 c = 53.812 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2017-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 05A 0.97907 NSRRC TPS 05A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 20 99.4 0.083 13.7 3.4 114858
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.18 1.22 95.2 0.413 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.18 20 97534 5134 88.34 0.10773 0.10655 0.13002 0.1437 RANDOM 20.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.04 -0.03 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.053 r_sphericity_free 35.2 r_dihedral_angle_4_deg 17.651 r_dihedral_angle_3_deg 11.171 r_sphericity_bonded 10.63 r_dihedral_angle_1_deg 6.002 r_long_range_B_refined 4.768 r_long_range_B_other 4.768 r_rigid_bond_restr 4.034 r_scangle_other 2.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.053 r_sphericity_free 35.2 r_dihedral_angle_4_deg 17.651 r_dihedral_angle_3_deg 11.171 r_sphericity_bonded 10.63 r_dihedral_angle_1_deg 6.002 r_long_range_B_refined 4.768 r_long_range_B_other 4.768 r_rigid_bond_restr 4.034 r_scangle_other 2.835 r_scbond_it 2.467 r_scbond_other 2.453 r_mcangle_it 1.75 r_mcangle_other 1.75 r_angle_refined_deg 1.532 r_mcbond_it 1.381 r_mcbond_other 1.377 r_angle_other_deg 0.856 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2893 Nucleic Acid Atoms Solvent Atoms 557 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement BUCCANEER model building HKL-2000 data scaling SHELXCD phasing HKL-2000 data reduction