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Crystal Structure of Chlamydomonas reinhardtii ARF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HUR 1HUR, 1RRG, 3AQ4, 5A1U experimental model PDB 1RRG 1HUR, 1RRG, 3AQ4, 5A1U experimental model PDB 3AQ4 1HUR, 1RRG, 3AQ4, 5A1U experimental model PDB 5A1U 1HUR, 1RRG, 3AQ4, 5A1U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 20% PEG8000, 200mM Ammonium Sulphate
Crystal Properties Matthews coefficient Solvent content 2.63 53.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.818 α = 90 b = 44.244 β = 90 c = 113.481 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2016-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE Cu FINE FOCUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 56.75 98.8 0.1 0.029 35.71 10.7 9681
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 92.8 0.734 0.259 0.887 2.44 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1HUR, 1RRG, 3AQ4, 5A1U 2.34 56.74 9171 448 98.47 0.22251 0.22037 0.2246 0.26563 0.2722 RANDOM 57.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 4.48 -3.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.664 r_dihedral_angle_3_deg 22.19 r_dihedral_angle_4_deg 17.912 r_long_range_B_other 9.737 r_long_range_B_refined 9.734 r_dihedral_angle_1_deg 7.887 r_mcangle_it 7.234 r_mcangle_other 7.23 r_scangle_other 7.109 r_scbond_other 4.857
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.664 r_dihedral_angle_3_deg 22.19 r_dihedral_angle_4_deg 17.912 r_long_range_B_other 9.737 r_long_range_B_refined 9.734 r_dihedral_angle_1_deg 7.887 r_mcangle_it 7.234 r_mcangle_other 7.23 r_scangle_other 7.109 r_scbond_other 4.857 r_scbond_it 4.851 r_mcbond_other 4.793 r_mcbond_it 4.792 r_angle_refined_deg 1.991 r_angle_other_deg 1.134 r_chiral_restr 0.129 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1410 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing