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Crystal Structure of Human ATP7B and TM Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CJK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 286 20%PEG8000,0.1M MES pH6.0,0.2M Ca(OAc)2
Crystal Properties Matthews coefficient Solvent content 2.71 54.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.267 α = 90 b = 87.74 β = 90 c = 78.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 1.37906 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 97.8 0.064 24.4 8 20975
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 0.292
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3CJK 1.6 43.87 19928 1029 97.76 0.16676 0.16521 0.1839 0.19537 0.2145 RANDOM 23.334
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.17 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.211 r_dihedral_angle_4_deg 16.831 r_dihedral_angle_3_deg 12.418 r_long_range_B_other 8.778 r_long_range_B_refined 8.759 r_dihedral_angle_1_deg 5.481 r_scangle_other 4.612 r_scbond_it 3.146 r_scbond_other 3.112 r_mcangle_it 2.514
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.211 r_dihedral_angle_4_deg 16.831 r_dihedral_angle_3_deg 12.418 r_long_range_B_other 8.778 r_long_range_B_refined 8.759 r_dihedral_angle_1_deg 5.481 r_scangle_other 4.612 r_scbond_it 3.146 r_scbond_other 3.112 r_mcangle_it 2.514 r_mcangle_other 2.512 r_mcbond_it 1.788 r_mcbond_other 1.773 r_angle_refined_deg 1.622 r_angle_other_deg 1.004 r_chiral_restr 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1017 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing