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Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M potassium thiocyanate, 20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.84 56.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.285 α = 90 b = 59.285 β = 90 c = 234.16 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315r 2017-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9796 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 50 86.2 43.9 4.8 21675
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.21 47.02 20644 1031 86.35 0.19674 0.19304 0.2008 0.27018 0.2708 RANDOM 57.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.917 r_dihedral_angle_4_deg 25.772 r_dihedral_angle_3_deg 17.715 r_long_range_B_refined 9.416 r_long_range_B_other 9.397 r_dihedral_angle_1_deg 7.796 r_scangle_other 7.359 r_mcangle_it 6.716 r_mcangle_other 6.716 r_scbond_it 5.288
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.917 r_dihedral_angle_4_deg 25.772 r_dihedral_angle_3_deg 17.715 r_long_range_B_refined 9.416 r_long_range_B_other 9.397 r_dihedral_angle_1_deg 7.796 r_scangle_other 7.359 r_mcangle_it 6.716 r_mcangle_other 6.716 r_scbond_it 5.288 r_scbond_other 5.285 r_mcbond_it 4.933 r_mcbond_other 4.93 r_angle_refined_deg 1.884 r_angle_other_deg 1.052 r_chiral_restr 0.107 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2930 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement MxDC data collection HKL-2000 data scaling