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Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other The structure of selenomethionine variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 Tacsimate
Crystal Properties Matthews coefficient Solvent content 3.25 62.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.521 α = 90 b = 110.521 β = 90 c = 524.877 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2013-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.9 0.15 0.154 0.034 7.3 21.2 60005
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 100 0.428 0.439 0.094 0.979 21.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT The structure of selenomethionine variant 2.6 43.74 56812 3023 99.85 0.2068 0.2039 0.21 0.2608 0.2618 RANDOM 42.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.29 r_dihedral_angle_3_deg 22.308 r_dihedral_angle_4_deg 20.447 r_dihedral_angle_1_deg 11.126 r_angle_refined_deg 0.574 r_angle_other_deg 0.463 r_chiral_restr 0.04 r_bond_refined_d 0.002 r_gen_planes_refined 0.001 r_bond_other_d
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.29 r_dihedral_angle_3_deg 22.308 r_dihedral_angle_4_deg 20.447 r_dihedral_angle_1_deg 11.126 r_angle_refined_deg 0.574 r_angle_other_deg 0.463 r_chiral_restr 0.04 r_bond_refined_d 0.002 r_gen_planes_refined 0.001 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10022 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 120
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing