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Mycobacterium tuberculosis LexA C-domain K197A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 298 100mM HEPES 200mM magnesium chloride, 22% polyacrylic acid sodium salt
Crystal Properties Matthews coefficient Solvent content 2.69 54.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.65 α = 90 b = 66.46 β = 90 c = 104.27 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9763 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 56.04 100 0.101 0.028 0.999 14.2 14 10404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 1.145 0.31 0.926
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IUMU 1.9 56.04 9902 496 99.9 0.24485 0.24285 0.2546 0.28754 0.2865 RANDOM 46.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 5.34 -5.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.418 r_dihedral_angle_3_deg 19.508 r_dihedral_angle_4_deg 14.488 r_long_range_B_refined 9.375 r_long_range_B_other 9.369 r_dihedral_angle_1_deg 8.842 r_scangle_other 7.311 r_mcangle_it 5.902 r_mcangle_other 5.902 r_scbond_it 5.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.418 r_dihedral_angle_3_deg 19.508 r_dihedral_angle_4_deg 14.488 r_long_range_B_refined 9.375 r_long_range_B_other 9.369 r_dihedral_angle_1_deg 8.842 r_scangle_other 7.311 r_mcangle_it 5.902 r_mcangle_other 5.902 r_scbond_it 5.264 r_scbond_other 5.256 r_mcbond_it 4.373 r_mcbond_other 4.37 r_angle_refined_deg 1.786 r_angle_other_deg 0.606 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 681 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing