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Mycobacterium tuberculosis LexA C-domain S160A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 298 100mM Bis-Tris, 200mM megnesium chloride, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.97 58.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.61 α = 90 b = 104.2 β = 104.08 c = 88.1 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9762 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 66.16 100 0.135 0.053 0.998 11.9 7.5 35018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 1.119 0.437 0.754
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IUMU 2.5 66.16 33284 1709 99.98 0.24389 0.24147 0.2427 0.29003 0.2913 RANDOM 59.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 1.7 -3.85 4.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.53 r_dihedral_angle_4_deg 21.498 r_dihedral_angle_3_deg 18.164 r_long_range_B_refined 10.248 r_long_range_B_other 10.247 r_mcangle_it 7.422 r_mcangle_other 7.422 r_dihedral_angle_1_deg 6.331 r_scangle_other 6.198 r_mcbond_it 4.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.53 r_dihedral_angle_4_deg 21.498 r_dihedral_angle_3_deg 18.164 r_long_range_B_refined 10.248 r_long_range_B_other 10.247 r_mcangle_it 7.422 r_mcangle_other 7.422 r_dihedral_angle_1_deg 6.331 r_scangle_other 6.198 r_mcbond_it 4.564 r_mcbond_other 4.564 r_scbond_it 3.929 r_scbond_other 3.928 r_angle_refined_deg 1.557 r_angle_other_deg 0.845 r_chiral_restr 0.061 r_bond_other_d 0.01 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5778 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing