☰ Navigation Tabs
Mycobacterium tuberculosis LexA C-domain I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 Tris-Hcl, Glycerol, Pentaerythritol ethoxylate
Crystal Properties Matthews coefficient Solvent content 2.59 52.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.62 α = 90 b = 42.62 β = 90 c = 116.05 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9537 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 22.82 99.7 0.059 0.026 0.999 14.5 5.9 21096
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.48 99.7 0.608 0.275 0.917 14.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IUMU 1.48 22.82 20030 1041 99.39 0.15061 0.14809 0.148 0.19712 0.1959 RANDOM 26.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.2 0.4 -1.3
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 31.98 r_dihedral_angle_2_deg 30.837 r_dihedral_angle_4_deg 24.8 r_sphericity_bonded 17.311 r_dihedral_angle_3_deg 12.167 r_dihedral_angle_1_deg 7.252 r_long_range_B_other 6.252 r_long_range_B_refined 6.246 r_scangle_other 4.741 r_scbond_it 3.994
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 31.98 r_dihedral_angle_2_deg 30.837 r_dihedral_angle_4_deg 24.8 r_sphericity_bonded 17.311 r_dihedral_angle_3_deg 12.167 r_dihedral_angle_1_deg 7.252 r_long_range_B_other 6.252 r_long_range_B_refined 6.246 r_scangle_other 4.741 r_scbond_it 3.994 r_scbond_other 3.994 r_mcangle_it 3.754 r_mcangle_other 3.754 r_rigid_bond_restr 3.482 r_mcbond_it 2.96 r_mcbond_other 2.957 r_angle_refined_deg 1.567 r_angle_other_deg 0.53 r_chiral_restr 0.081 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 728 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing