☰ Navigation Tabs
Heterodimeric SpyCatcher/SpyTag-fused zebrafish TRAP1 in ATP/ADP-hybrid state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4J0B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.19 M potassium acetate,
20-22% PEG3350,
Benzamidine hydrochloride (5-25 mM)
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.086 α = 90 b = 95.711 β = 134.59 c = 126.558 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 91.4 CCD ADSC QUANTUM 315r 2016-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 90.13 83 0.146 9.1 2.5 21244
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4J0B 3.2 49 21154 1014 82.98 0.2299 0.2284 0.2266 0.261 0.2604 RANDOM 126.776
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.35 -1.62 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.929 r_dihedral_angle_4_deg 20.196 r_dihedral_angle_3_deg 15.678 r_dihedral_angle_1_deg 6.01 r_mcangle_it 4.993 r_angle_other_deg 3.596 r_mcbond_it 2.92 r_mcbond_other 2.92 r_angle_refined_deg 1.49 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.929 r_dihedral_angle_4_deg 20.196 r_dihedral_angle_3_deg 15.678 r_dihedral_angle_1_deg 6.01 r_mcangle_it 4.993 r_angle_other_deg 3.596 r_mcbond_it 2.92 r_mcbond_other 2.92 r_angle_refined_deg 1.49 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10351 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing