5TLQ
Model structure of the oxidized PaDsbA1 and 3-[(2-methylbenzyl)sulfanyl]-4H-1,2,4-triazol-4-amine complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC | 0.3 mM [U-98% 13C; U-98% 15N] PaDsbA1, 3.3 mM 3-((2-methylbenzyl)thio)-4H-1,2,4-triazol-4-amine | 97.3%D2O+1.7%D6-DMSO | 50 mM NaCl and 50 mM sodium phosphate | 7.4 | 1 bar | 298 | Bruker AVANCE II 800 |
3 | 3D F1-13C,15N filtered F3-13Cedited [1H,1H]-NOESY | 0.3 mM [U-98% 13C; U-98% 15N] PaDsbA1, 3.3 mM 3-((2-methylbenzyl)thio)-4H-1,2,4-triazol-4-amine | 97.3%D2O+1.7%D6-DMSO | 50 mM NaCl and 50 mM sodium phosphate | 7.4 | 1 bar | 298 | Bruker AVANCE II 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | 2MBT from the same group was used for HADDOCK model building | HADDOCK |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | CARA | Keller and Wuthrich | |
3 | structure calculation | HADDOCK | Bonvin | |
4 | peak picking | XEASY | Bartels et al. | |
5 | refinement | HADDOCK | Bonvin |