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Model structure of the oxidized PaDsbA1 and 3-[(2-methylbenzyl)sulfanyl]-4H-1,2,4-triazol-4-amine complex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 0.3 mM [U-98% 13C; U-98% 15N] PaDsbA1, 3.3 mM 3-((2-methylbenzyl)thio)-4H-1,2,4-triazol-4-amine 97.3%D2O+1.7%D6-DMSO 50 mM NaCl and 50 mM sodium phosphate 7.4 1 bar 298 Bruker AVANCE II 800 3 3D F1-13C,15N filtered F3-13Cedited [1H,1H]-NOESY 0.3 mM [U-98% 13C; U-98% 15N] PaDsbA1, 3.3 mM 3-((2-methylbenzyl)thio)-4H-1,2,4-triazol-4-amine 97.3%D2O+1.7%D6-DMSO 50 mM NaCl and 50 mM sodium phosphate 7.4 1 bar 298 Bruker AVANCE II 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE II 800
NMR Refinement Method Details Software simulated annealing 2MBT from the same group was used for HADDOCK model building HADDOCK
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin Bruker Biospin 2 chemical shift assignment CARA Keller and Wuthrich 3 structure calculation HADDOCK Bonvin 4 peak picking XEASY Bartels et al. 5 refinement HADDOCK Bonvin