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Crystal structure of BhGH81 in complex with laminarin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5T49
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 291 1.4 M NaH2PO4, 0.2 M K2HPO4, 0.1 M citric acid
Crystal Properties Matthews coefficient Solvent content 2.92 57.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.4 α = 90 b = 97.19 β = 90 c = 156.38 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2014-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 82.55 92.2 0.098 0.996 12.7 6.4 85487
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 88.3 0.441 0.887 4.4 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5T49 1.8 82.55 81098 4320 91.79 0.1625 0.1617 0.1617 0.1775 0.1775 RANDOM 18.254
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.675 r_dihedral_angle_4_deg 13.949 r_dihedral_angle_3_deg 12.128 r_dihedral_angle_1_deg 6.107 r_angle_refined_deg 1.204 r_mcangle_it 0.944 r_scbond_it 0.843 r_mcbond_it 0.544 r_chiral_restr 0.081 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.675 r_dihedral_angle_4_deg 13.949 r_dihedral_angle_3_deg 12.128 r_dihedral_angle_1_deg 6.107 r_angle_refined_deg 1.204 r_mcangle_it 0.944 r_scbond_it 0.843 r_mcbond_it 0.544 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6022 Nucleic Acid Atoms Solvent Atoms 657 Heterogen Atoms 296
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction