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Cu nitrite reductase serial data at varying temperatures RT 0.09MGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5I6K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.03 39.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.241 α = 90 b = 96.241 β = 90 c = 96.241 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M 2015-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.8 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 55.56 99.6 0.081 0.99 5.2 3.3 36457
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.68 99.8 0.552 0.53 1.3 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5I6K 1.64 55.56 34428 1992 99.46 0.16525 0.16378 0.19041 0.1904 RANDOM 21.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.836 r_dihedral_angle_4_deg 20.849 r_dihedral_angle_3_deg 13.583 r_dihedral_angle_1_deg 7.51 r_long_range_B_refined 5.521 r_long_range_B_other 5.462 r_scangle_other 3.828 r_scbond_it 2.447 r_scbond_other 2.364 r_mcangle_other 2.189
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.836 r_dihedral_angle_4_deg 20.849 r_dihedral_angle_3_deg 13.583 r_dihedral_angle_1_deg 7.51 r_long_range_B_refined 5.521 r_long_range_B_other 5.462 r_scangle_other 3.828 r_scbond_it 2.447 r_scbond_other 2.364 r_mcangle_other 2.189 r_mcangle_it 2.188 r_angle_refined_deg 1.652 r_mcbond_it 1.463 r_mcbond_other 1.458 r_angle_other_deg 0.99 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2566 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DIALS data collection XDS data reduction Aimless data scaling REFMAC phasing