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Crystal structure of 2-methylcitrate dehydratase (MmgE) from Bacillus subtilis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M potassium/sodium tartrate, 20 % w/v PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.52 51.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.831 α = 90 b = 194.409 β = 92.74 c = 90.869 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30.8 99.5 0.64 4.5 6.3 200076
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30.8 200076 10311 99.39 0.15279 0.15094 0.152 0.18926 0.188 RANDOM 19.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.59 -12.56 -5.54 8.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.827 r_dihedral_angle_4_deg 21.318 r_dihedral_angle_3_deg 13.847 r_dihedral_angle_1_deg 7.72 r_long_range_B_refined 6.434 r_long_range_B_other 6.433 r_scangle_other 5.072 r_mcangle_it 3.602 r_mcangle_other 3.601 r_scbond_it 3.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.827 r_dihedral_angle_4_deg 21.318 r_dihedral_angle_3_deg 13.847 r_dihedral_angle_1_deg 7.72 r_long_range_B_refined 6.434 r_long_range_B_other 6.433 r_scangle_other 5.072 r_mcangle_it 3.602 r_mcangle_other 3.601 r_scbond_it 3.525 r_scbond_other 3.525 r_mcbond_it 2.628 r_mcbond_other 2.628 r_angle_refined_deg 1.484 r_angle_other_deg 1.289 r_chiral_restr 0.141 r_gen_planes_refined 0.017 r_bond_refined_d 0.014 r_gen_planes_other 0.011 r_bond_other_d 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22020 Nucleic Acid Atoms Solvent Atoms 1026 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing