X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
in silico modelOthercomputation designed

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION9.52981.27 M sodium citrate, CAPS pH 10.5 or CHES pH 9.5
Crystal Properties
Matthews coefficientSolvent content
2.2545.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.917α = 90
b = 92.246β = 92.39
c = 162.005γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152014-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.74161.8695.520.0940.0940.59617.38158.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.742.8461.20.81.093.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTcomputation designed2.74161.8643236231694.970.192960.190890.23047RANDOM92.078
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.21-1.261.721.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.197
r_dihedral_angle_3_deg21.56
r_dihedral_angle_4_deg17.285
r_long_range_B_refined9.362
r_long_range_B_other9.361
r_scangle_other7.003
r_dihedral_angle_1_deg6.469
r_mcangle_it5.101
r_mcangle_other5.101
r_scbond_it4.374
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.197
r_dihedral_angle_3_deg21.56
r_dihedral_angle_4_deg17.285
r_long_range_B_refined9.362
r_long_range_B_other9.361
r_scangle_other7.003
r_dihedral_angle_1_deg6.469
r_mcangle_it5.101
r_mcangle_other5.101
r_scbond_it4.374
r_scbond_other4.374
r_mcbond_it3.25
r_mcbond_other3.25
r_angle_other_deg2.084
r_angle_refined_deg1.987
r_chiral_restr0.128
r_bond_refined_d0.018
r_bond_other_d0.011
r_gen_planes_refined0.011
r_gen_planes_other0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13039
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction