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Apo Structure of Linalool Dehydratase-Isomerase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SEMET STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M BIS-TRIS PROPANE BUFFER PH 6.5 WITH 25% (W/V) PEG 3350, 10% (W/V) METHYLPENTANE DIOL AND 0.1 M SODIUM MALONATE
Crystal Properties Matthews coefficient Solvent content 2.77 55.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.062 α = 90 b = 110.148 β = 91.32 c = 195.338 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 2015-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 47.97 97 0.08 10.6 4.2 218882 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.79 95.9 0.67 1.7 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SEMET STRUCTURE 1.76 47.97 208055 10822 96.88 0.15178 0.1505 0.1632 0.1762 0.187 RANDOM 20.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 0.14 1.32 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.441 r_dihedral_angle_4_deg 14.229 r_dihedral_angle_3_deg 12.092 r_dihedral_angle_1_deg 6.053 r_scbond_it 3.108 r_mcangle_it 2.269 r_angle_refined_deg 1.82 r_mcbond_it 1.726 r_mcbond_other 1.726 r_angle_other_deg 1.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.441 r_dihedral_angle_4_deg 14.229 r_dihedral_angle_3_deg 12.092 r_dihedral_angle_1_deg 6.053 r_scbond_it 3.108 r_mcangle_it 2.269 r_angle_refined_deg 1.82 r_mcbond_it 1.726 r_mcbond_other 1.726 r_angle_other_deg 1.602 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.014 r_bond_other_d 0.011 r_gen_planes_other 0.009 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14429 Nucleic Acid Atoms Solvent Atoms 2094 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing