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Human Spectrin SH3 domain D48G, E7Y, K60Y
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BK2 PDB ENTRY 1BK2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.43 49.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.234 α = 90 b = 42.005 β = 90 c = 50.336 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 42.01 99.3 0.04 13.5 3.5 10702 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BK2 1.55 32.25 10169 503 99.56 0.2052 0.20324 0.1976 0.24891 0.2428 RANDOM 22.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 -1.32 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.73 r_dihedral_angle_4_deg 26.468 r_dihedral_angle_3_deg 12.109 r_scangle_it 7.169 r_dihedral_angle_1_deg 6.165 r_scbond_it 4.362 r_rigid_bond_restr 4.169 r_mcangle_it 2.963 r_angle_refined_deg 2.406 r_mcbond_it 1.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.73 r_dihedral_angle_4_deg 26.468 r_dihedral_angle_3_deg 12.109 r_scangle_it 7.169 r_dihedral_angle_1_deg 6.165 r_scbond_it 4.362 r_rigid_bond_restr 4.169 r_mcangle_it 2.963 r_angle_refined_deg 2.406 r_mcbond_it 1.718 r_chiral_restr 0.223 r_bond_refined_d 0.03 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 473 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement