X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4HBT 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2980.2M ammonium sulfate, 0.1M MES pH6.5, 30% PEG5K monomethyl ether
Crystal Properties
Matthews coefficientSolvent content
1.9436.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.89α = 90
b = 62.73β = 90
c = 175.49γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002013-07-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-11.00CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1333.2898.37.84.410061

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4HBT3.0133.28948754198.240.225760.223080.27154RANDOM30.233
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.93-0.31-1.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg45.797
r_dihedral_angle_3_deg16.409
r_dihedral_angle_4_deg10.398
r_long_range_B_refined5.552
r_long_range_B_other5.551
r_scangle_other4.307
r_dihedral_angle_1_deg2.953
r_scbond_it2.737
r_scbond_other2.736
r_angle_other_deg2.225
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg45.797
r_dihedral_angle_3_deg16.409
r_dihedral_angle_4_deg10.398
r_long_range_B_refined5.552
r_long_range_B_other5.551
r_scangle_other4.307
r_dihedral_angle_1_deg2.953
r_scbond_it2.737
r_scbond_other2.736
r_angle_other_deg2.225
r_mcangle_other1.866
r_mcangle_it1.865
r_angle_refined_deg1.43
r_mcbond_it1.221
r_mcbond_other1.219
r_chiral_restr0.085
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3888
Nucleic Acid Atoms
Solvent Atoms33
Heterogen Atoms46

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing