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CTX-M-15 in complex with FPI-1465
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HBT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2M ammonium sulfate, 0.1M MES pH6.5, 30% PEG5K monomethyl ether
Crystal Properties Matthews coefficient Solvent content 1.94 36.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.89 α = 90 b = 62.73 β = 90 c = 175.49 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2013-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.00 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 33.28 98.3 7.8 4.4 10061
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HBT 3.01 33.28 9487 541 98.24 0.22576 0.22308 0.2243 0.27154 0.2683 RANDOM 30.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.93 -0.31 -1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.797 r_dihedral_angle_3_deg 16.409 r_dihedral_angle_4_deg 10.398 r_long_range_B_refined 5.552 r_long_range_B_other 5.551 r_scangle_other 4.307 r_dihedral_angle_1_deg 2.953 r_scbond_it 2.737 r_scbond_other 2.736 r_angle_other_deg 2.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.797 r_dihedral_angle_3_deg 16.409 r_dihedral_angle_4_deg 10.398 r_long_range_B_refined 5.552 r_long_range_B_other 5.551 r_scangle_other 4.307 r_dihedral_angle_1_deg 2.953 r_scbond_it 2.737 r_scbond_other 2.736 r_angle_other_deg 2.225 r_mcangle_other 1.866 r_mcangle_it 1.865 r_angle_refined_deg 1.43 r_mcbond_it 1.221 r_mcbond_other 1.219 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3888 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing