X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529828 - 32% PEGMME550, HEPES, Mg++
Crystal Properties
Matthews coefficientSolvent content
2.2239.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.518α = 90
b = 67.326β = 90
c = 98.572γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 702015-04-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.225920.088176.71983611
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2859.20.6192.34.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.2251859395792.730.182760.179090.25448RANDOM34.571
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.68-0.66-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.322
r_dihedral_angle_4_deg17.627
r_dihedral_angle_3_deg17.601
r_dihedral_angle_1_deg6.991
r_long_range_B_refined4.67
r_long_range_B_other4.67
r_scangle_other2.46
r_mcangle_it2.303
r_mcangle_other2.302
r_angle_refined_deg2.064
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.322
r_dihedral_angle_4_deg17.627
r_dihedral_angle_3_deg17.601
r_dihedral_angle_1_deg6.991
r_long_range_B_refined4.67
r_long_range_B_other4.67
r_scangle_other2.46
r_mcangle_it2.303
r_mcangle_other2.302
r_angle_refined_deg2.064
r_scbond_it1.506
r_scbond_other1.503
r_mcbond_other1.38
r_mcbond_it1.379
r_angle_other_deg1.304
r_chiral_restr0.117
r_bond_refined_d0.018
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2339
Nucleic Acid Atoms1019
Solvent Atoms188
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing