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Kinetics by X-ray crystallography: E2.MgF42-.2RB+ crystal
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZXE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7 298 PEG 3000, MPD, potassium acetate, rubidium acetate, magnesium chloride, potassium fluoride, MES/TRIS
Crystal Properties Matthews coefficient Solvent content 2.84 56.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 222.122 α = 90 b = 50.706 β = 104.85 c = 163.256 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2009-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.8130 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 97.2 19.5 5.7 42895 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZXE 2.8 14.99 3.5 30700 892 70 0.251 0.251 0.2672 0.257 0.2689 RANDOM 90.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 19.98 -8.09 1.74 -21.73
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.8 c_mcangle_it 1.41 c_improper_angle_d 1.37 c_scangle_it 1.2 c_angle_deg 1.1 c_mcbond_it 0.78 c_scbond_it 0.78 c_bond_d 0.009 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.8 c_mcangle_it 1.41 c_improper_angle_d 1.37 c_scangle_it 1.2 c_angle_deg 1.1 c_mcbond_it 0.78 c_scbond_it 0.78 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10154 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 79
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing