X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7293.1525% PEG 8000, 0.1M PIPES
2VAPOR DIFFUSION, SITTING DROP7293.1525% PEG 8000, 0.1M PIPES
Crystal Properties
Matthews coefficientSolvent content
2.3647.79
2.3647.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.458α = 90
b = 88.053β = 101.47
c = 81.184γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HE2018-03-12MSINGLE WAVELENGTH
22x-ray100CCDADSC QUANTUM 315r2017-12-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL15A11.00928NSRRCBL15A1
2SYNCHROTRONNSRRC BEAMLINE BL13B11.0000NSRRCBL13B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.753099.50.0330.0390.0234.823.765452
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8198.10.4390.5250.2850.8242.133.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7529.5262103332699.250.17060.169330.19466RANDOM43.475
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.74-0.3-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.805
r_dihedral_angle_3_deg16.909
r_dihedral_angle_4_deg16.718
r_long_range_B_refined8.586
r_scbond_it7.084
r_mcangle_it6.658
r_dihedral_angle_1_deg5.712
r_mcbond_it5.478
r_rigid_bond_restr4.087
r_angle_refined_deg1.381
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.805
r_dihedral_angle_3_deg16.909
r_dihedral_angle_4_deg16.718
r_long_range_B_refined8.586
r_scbond_it7.084
r_mcangle_it6.658
r_dihedral_angle_1_deg5.712
r_mcbond_it5.478
r_rigid_bond_restr4.087
r_angle_refined_deg1.381
r_chiral_restr0.102
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4704
Nucleic Acid Atoms
Solvent Atoms351
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
HKL-2000data scaling
HKL-2000data reduction
PHENIXphasing