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Crystal structure of human monoacylglycerol lipase in complex with compound 3l
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PE6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.1M Bis-Tris, 10% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.73 55.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.149 α = 90 b = 127.224 β = 90 c = 60.25 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 98 0.074 22.6 6.9 78596
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 77.3 0.852 1.5 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3PE6 1.35 40 74657 3916 97.83 0.14758 0.14693 0.1468 0.16008 0.1609 RANDOM 14.803
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.38 -0.69 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.758 r_dihedral_angle_4_deg 18.116 r_dihedral_angle_3_deg 13.097 r_dihedral_angle_1_deg 5.832 r_long_range_B_refined 4.353 r_long_range_B_other 4.001 r_scangle_other 2.007 r_angle_refined_deg 1.603 r_mcangle_other 1.428 r_mcangle_it 1.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.758 r_dihedral_angle_4_deg 18.116 r_dihedral_angle_3_deg 13.097 r_dihedral_angle_1_deg 5.832 r_long_range_B_refined 4.353 r_long_range_B_other 4.001 r_scangle_other 2.007 r_angle_refined_deg 1.603 r_mcangle_other 1.428 r_mcangle_it 1.424 r_scbond_it 1.284 r_scbond_other 1.282 r_mcbond_it 0.834 r_mcbond_other 0.833 r_angle_other_deg 0.55 r_chiral_restr 0.074 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2238 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing