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Proteobacterial origin of protein arginine methylation and regulation of Complex I assembly by MidA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 8% ethylene glycol, 0.1M HEPES pH 7.5, 10% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.75 55.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.011 α = 90 b = 105.629 β = 90 c = 201.069 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD ADSC QUANTUM 315 2012-08-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 0.9794, 0.9796, 0.9642 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 100.53 96.81 0.17 6.98 10.8 37830
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 100.53 35834 2000 96.79 0.21572 0.21462 0.2229 0.23515 0.2434 RANDOM 50.281
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.96 2.34 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.381 r_dihedral_angle_4_deg 13.791 r_dihedral_angle_3_deg 13.673 r_long_range_B_refined 7.247 r_long_range_B_other 7.247 r_dihedral_angle_1_deg 5.763 r_mcangle_it 2.725 r_mcangle_other 2.725 r_scangle_other 2.688 r_scbond_it 1.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.381 r_dihedral_angle_4_deg 13.791 r_dihedral_angle_3_deg 13.673 r_long_range_B_refined 7.247 r_long_range_B_other 7.247 r_dihedral_angle_1_deg 5.763 r_mcangle_it 2.725 r_mcangle_other 2.725 r_scangle_other 2.688 r_scbond_it 1.705 r_scbond_other 1.704 r_mcbond_it 1.553 r_mcbond_other 1.551 r_angle_refined_deg 1.176 r_angle_other_deg 0.814 r_chiral_restr 0.083 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9603 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing