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Crystal structure of monkey TLR7 in complex with GGUUGG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG 8000, ammonium sulfate, sodium citrate pH 5.0, Tris-HCl pH 7.5 and NaCl
Crystal Properties Matthews coefficient Solvent content 2.71 54.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.63 α = 90 b = 139.424 β = 90 c = 150.893 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.9 15.1 6.7 93814
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 47.36 89187 4644 99.92 0.21946 0.2175 0.2209 0.25843 0.2601 RANDOM 50.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 1.12 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.675 r_dihedral_angle_4_deg 21.799 r_dihedral_angle_3_deg 15.388 r_long_range_B_refined 8.504 r_long_range_B_other 8.504 r_dihedral_angle_1_deg 7.221 r_scangle_other 6.778 r_mcangle_other 5.482 r_mcangle_it 5.481 r_scbond_it 4.515
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.675 r_dihedral_angle_4_deg 21.799 r_dihedral_angle_3_deg 15.388 r_long_range_B_refined 8.504 r_long_range_B_other 8.504 r_dihedral_angle_1_deg 7.221 r_scangle_other 6.778 r_mcangle_other 5.482 r_mcangle_it 5.481 r_scbond_it 4.515 r_scbond_other 4.515 r_mcbond_it 3.827 r_mcbond_other 3.827 r_angle_refined_deg 1.369 r_angle_other_deg 0.837 r_chiral_restr 0.062 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12550 Nucleic Acid Atoms 134 Solvent Atoms 15 Heterogen Atoms 347
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing