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M. smegmatis antimutator protein MutT2 in complex with CDP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZRC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 292 0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 30% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.11 40.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.8 α = 90 b = 72.71 β = 104.7 c = 59.17 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2014-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.541790
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30.76 98.7 0.127 9.1 7.1 33778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 91.1 0.721 2.4 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZRC 1.61 30.76 32024 1711 99.59 0.20125 0.19937 0.2101 0.235 0.2396 RANDOM 17.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.63 -0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.452 r_dihedral_angle_4_deg 15.939 r_dihedral_angle_3_deg 12.383 r_dihedral_angle_1_deg 7.812 r_long_range_B_other 6.601 r_long_range_B_refined 6.6 r_scangle_other 4.665 r_scbond_it 3.336 r_scbond_other 3.331 r_mcangle_it 3.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.452 r_dihedral_angle_4_deg 15.939 r_dihedral_angle_3_deg 12.383 r_dihedral_angle_1_deg 7.812 r_long_range_B_other 6.601 r_long_range_B_refined 6.6 r_scangle_other 4.665 r_scbond_it 3.336 r_scbond_other 3.331 r_mcangle_it 3.127 r_mcangle_other 3.127 r_mcbond_it 2.181 r_mcbond_other 2.148 r_angle_refined_deg 1.109 r_angle_other_deg 0.649 r_chiral_restr 0.075 r_gen_planes_refined 0.016 r_bond_refined_d 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1892 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing