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M. smegmatis antimutator protein MutT2 in complex with dCTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZRC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 292 0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 30% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.07 39.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.78 α = 90 b = 72.72 β = 105.36 c = 58.32 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-01-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.978560 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 22.27 98.1 0.057 9.6 2.8 40931
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.57 96.8 0.561 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZRC 1.49 22.27 38850 2058 97.86 0.13229 0.12994 0.1293 0.17587 0.1752 RANDOM 20.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.04 -0.31
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.464 r_dihedral_angle_2_deg 33.239 r_dihedral_angle_4_deg 16.941 r_sphericity_bonded 14.802 r_rigid_bond_restr 13.329 r_dihedral_angle_3_deg 11.267 r_scangle_other 7.037 r_dihedral_angle_1_deg 6.743 r_long_range_B_refined 6.395 r_scbond_other 6.103
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.464 r_dihedral_angle_2_deg 33.239 r_dihedral_angle_4_deg 16.941 r_sphericity_bonded 14.802 r_rigid_bond_restr 13.329 r_dihedral_angle_3_deg 11.267 r_scangle_other 7.037 r_dihedral_angle_1_deg 6.743 r_long_range_B_refined 6.395 r_scbond_other 6.103 r_scbond_it 6.1 r_long_range_B_other 5.973 r_mcangle_it 4.354 r_mcangle_other 4.354 r_mcbond_it 3.795 r_mcbond_other 3.752 r_angle_refined_deg 1.454 r_angle_other_deg 0.807 r_chiral_restr 0.09 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1892 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing