☰ Navigation Tabs
Crystal structure of a penta-heme cytochrome c552 from Thermochromatium tepidum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG 3350, calcium chloride, ammonium chloride
Crystal Properties Matthews coefficient Solvent content 1.92 36.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.7 α = 90 b = 39.1 β = 109.31 c = 68.65 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 68.28 99.94 0.999 25.02 12.9 48283
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 99.66 0.841 5.16 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 68.28 45846 2437 99.94 0.1595 0.1577 0.1699 0.1908 0.1989 RANDOM 20.417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.059 r_dihedral_angle_4_deg 25.626 r_dihedral_angle_3_deg 14.806 r_dihedral_angle_1_deg 6.538 r_angle_refined_deg 2.261 r_angle_other_deg 1.292 r_chiral_restr 0.165 r_bond_refined_d 0.023 r_gen_planes_refined 0.018 r_gen_planes_other 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.059 r_dihedral_angle_4_deg 25.626 r_dihedral_angle_3_deg 14.806 r_dihedral_angle_1_deg 6.538 r_angle_refined_deg 2.261 r_angle_other_deg 1.292 r_chiral_restr 0.165 r_bond_refined_d 0.023 r_gen_planes_refined 0.018 r_gen_planes_other 0.018 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2975 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 226
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling SHELXDE phasing