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Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N SOFAST-HMQC 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 90% H2O/10% D2O 0 0 AMBIENT atm 300 Bruker AVANCE III 600 2 2D 1H-13C HSQC 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 90% H2O/10% D2O 0 0 AMBIENT atm 300 Bruker AVANCE III 600 3 3D 1H-15N NOESY 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 90% H2O/10% D2O 0 0 AMBIENT atm 300 Bruker AVANCE III 600 4 3D 1H-13C NOESY 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 90% H2O/10% D2O 0 0 AMBIENT atm 300 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software energy minimization OPAL
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1000 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 refinement OPAL 1.4 Luginbuhl, Guntert, Billeter and Wuthrich 2 processing Azara 2.8.1 Boucher 3 structure calculation CYANA 3.98 Guntert, Mumenthaler and Wuthrich 4 chemical shift assignment CcpNmr Analysis 2.4.2 CCPN 5 peak picking CcpNmr Analysis 2.4.2 CCPN