5ZCZ
Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N SOFAST-HMQC | 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 | 90% H2O/10% D2O | 0 | 0 | AMBIENT atm | 300 | Bruker AVANCE III 600 |
2 | 2D 1H-13C HSQC | 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 | 90% H2O/10% D2O | 0 | 0 | AMBIENT atm | 300 | Bruker AVANCE III 600 |
3 | 3D 1H-15N NOESY | 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 | 90% H2O/10% D2O | 0 | 0 | AMBIENT atm | 300 | Bruker AVANCE III 600 |
4 | 3D 1H-13C NOESY | 50 uM [U-100% 13C; U-100% 15N] thermophilus HB8 TTHA1718 gene product 1, 50 uM [U-100% 15N] thermophilus HB8 TTHA1718 gene product 2 | 90% H2O/10% D2O | 0 | 0 | AMBIENT atm | 300 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
energy minimization | OPAL |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | OPAL | 1.4 | Luginbuhl, Guntert, Billeter and Wuthrich |
2 | processing | Azara | 2.8.1 | Boucher |
3 | structure calculation | CYANA | 3.98 | Guntert, Mumenthaler and Wuthrich |
4 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
5 | peak picking | CcpNmr Analysis | 2.4.2 | CCPN |