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Crystal structure of Rad7 and Elc1 complex in yeast
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 0.1 M KCl, 0.1 M sodium Citrate tribasic dihydrate, 22% PEG 3350, 0.1 M Yttrium(III) cloride hexahydrate
Crystal Properties Matthews coefficient Solvent content 2.37 48.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.921 α = 90 b = 67.764 β = 90 c = 69.015 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2016-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 1.1000 Photon Factory BL-1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.5 0.11 0.116 0.035 6.3 10.8 24237 40.6194408749
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 96.3 0.682 0.713 0.203 0.898 11.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.30000538295 48.3526115655 1.35155306082 23163 1930 97.4873737374 0.197077370165 0.194547878919 0.1974 0.224072294486 0.2281 57.0157372333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.8097103441 f_angle_d 0.529741296274 f_chiral_restr 0.0407692024212 f_bond_d 0.00329211582092 f_plane_restr 0.00227910593722
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3789 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms 141
Software Software Software Name Purpose phenix.refine refinement PHENIX refinement DENZO data reduction SCALEPACK data scaling PDB_EXTRACT data extraction SHELXCD phasing