X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2A152A15, 1OH0
experimental modelPDB 1OH02A15, 1OH0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2910.1M Tri-Sodium acetate pH 4.5, 0.1M Bis-Tris pH 5.5, 21%-29% Polyethylene glycol 3350
Crystal Properties
Matthews coefficientSolvent content
3.0960.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.63α = 90
b = 107.84β = 90
c = 301.66γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2017-12-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.979SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4247.8151000.1020.0290.9991.91459832
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.422.491.6980.4080.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2A15, 1OH02.4247.8156965286799.940.22270.22030.2703RANDOM61.934
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.183.63-1.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.577
r_dihedral_angle_4_deg19.335
r_dihedral_angle_3_deg15.787
r_dihedral_angle_1_deg7.155
r_mcangle_it6.855
r_mcbond_it4.923
r_mcbond_other4.919
r_angle_other_deg3.934
r_angle_refined_deg1.788
r_chiral_restr0.095
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.577
r_dihedral_angle_4_deg19.335
r_dihedral_angle_3_deg15.787
r_dihedral_angle_1_deg7.155
r_mcangle_it6.855
r_mcbond_it4.923
r_mcbond_other4.919
r_angle_other_deg3.934
r_angle_refined_deg1.788
r_chiral_restr0.095
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_gen_planes_other0.008
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7955
Nucleic Acid Atoms
Solvent Atoms13
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
xia2data reduction
Aimlessdata scaling
BUCCANEERmodel building
REFMACrefinement
PDB_EXTRACTdata extraction