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Crystal Structure of Grass Carp CD8 alpha alpha Homodimers
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.2M Ammonium phosphate monobasic, 20%(w/v) Polyethylene glycol 3,350
Crystal Properties Matthews coefficient Solvent content 2.46 50.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.91 α = 90 b = 47.91 β = 90 c = 242.97 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Nonius Kappa CCD 2016-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 0.987
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.8 5.4 12.4 12041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 99.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 47 12041 612 99.45 0.20308 0.20027 0.207 0.25804 0.2621 RANDOM 51.679
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.834 r_dihedral_angle_4_deg 29.286 r_dihedral_angle_3_deg 15.353 r_long_range_B_other 11.214 r_long_range_B_refined 11.207 r_scangle_other 9.327 r_dihedral_angle_1_deg 7.352 r_scbond_it 6.2 r_scbond_other 6.199 r_mcangle_it 6.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.834 r_dihedral_angle_4_deg 29.286 r_dihedral_angle_3_deg 15.353 r_long_range_B_other 11.214 r_long_range_B_refined 11.207 r_scangle_other 9.327 r_dihedral_angle_1_deg 7.352 r_scbond_it 6.2 r_scbond_other 6.199 r_mcangle_it 6.185 r_mcangle_other 6.183 r_mcbond_it 4.436 r_mcbond_other 4.433 r_angle_refined_deg 1.903 r_angle_other_deg 0.981 r_chiral_restr 0.11 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1604 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing