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Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 IN CELL 300 In vivo crystallization in the cytoplasm of the cell, temperature 300 K
Crystal Properties Matthews coefficient Solvent content 1.63 24.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.7 α = 90 b = 103.7 β = 90 c = 103.7 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 42.34 100 6.51 21.1 15866
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.79 42.34 15866 1748 99.98 0.16404 0.15839 0.1706 0.21784 0.2296 RANDOM 17.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.478 r_dihedral_angle_4_deg 18.778 r_dihedral_angle_3_deg 13.989 r_dihedral_angle_1_deg 6.611 r_long_range_B_refined 4.659 r_long_range_B_other 4.593 r_scangle_other 3.281 r_scbond_it 2.085 r_scbond_other 2.081 r_mcangle_it 2.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.478 r_dihedral_angle_4_deg 18.778 r_dihedral_angle_3_deg 13.989 r_dihedral_angle_1_deg 6.611 r_long_range_B_refined 4.659 r_long_range_B_other 4.593 r_scangle_other 3.281 r_scbond_it 2.085 r_scbond_other 2.081 r_mcangle_it 2.043 r_mcangle_other 2.043 r_angle_refined_deg 1.754 r_mcbond_it 1.342 r_mcbond_other 1.341 r_angle_other_deg 1.024 r_chiral_restr 0.114 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1965 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing