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Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C Mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 IN CELL 300 In vivo crystallization in the cytoplasm of the cell, temperature 300 K
Crystal Properties Matthews coefficient Solvent content 1.64 25.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.75 α = 90 b = 103.75 β = 90 c = 103.75 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2015-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 1.0 SPring-8 BL32XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 36.68 100 8.49 27.3 18547
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 36.68 18547 2025 99.98 0.16234 0.15787 0.1709 0.2047 0.2165 RANDOM 13.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.616 r_dihedral_angle_4_deg 21.288 r_dihedral_angle_3_deg 14.049 r_dihedral_angle_1_deg 6.237 r_long_range_B_refined 5.246 r_long_range_B_other 5.198 r_scangle_other 3.538 r_scbond_it 2.213 r_scbond_other 2.211 r_mcangle_it 1.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.616 r_dihedral_angle_4_deg 21.288 r_dihedral_angle_3_deg 14.049 r_dihedral_angle_1_deg 6.237 r_long_range_B_refined 5.246 r_long_range_B_other 5.198 r_scangle_other 3.538 r_scbond_it 2.213 r_scbond_other 2.211 r_mcangle_it 1.865 r_mcangle_other 1.864 r_angle_refined_deg 1.863 r_mcbond_it 1.17 r_mcbond_other 1.168 r_angle_other_deg 1.058 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1914 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing