☰ Navigation Tabs
Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 IN CELL 300 In vivo crystallization in the cytoplasm of the cell, temperature 300 K
Crystal Properties Matthews coefficient Solvent content 1.63 24.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.59 α = 90 b = 103.59 β = 90 c = 103.59 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 1.0 SPring-8 BL32XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 32.76 98.5 5.57 4.9 17570
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 32.76 17570 1932 98.5 0.16114 0.15613 0.1681 0.20851 0.2192 RANDOM 15.313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.839 r_dihedral_angle_4_deg 17.459 r_dihedral_angle_3_deg 12.386 r_dihedral_angle_1_deg 6.668 r_long_range_B_refined 4.717 r_long_range_B_other 4.662 r_scangle_other 3.168 r_scbond_it 2.042 r_scbond_other 2.042 r_mcangle_it 1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.839 r_dihedral_angle_4_deg 17.459 r_dihedral_angle_3_deg 12.386 r_dihedral_angle_1_deg 6.668 r_long_range_B_refined 4.717 r_long_range_B_other 4.662 r_scangle_other 3.168 r_scbond_it 2.042 r_scbond_other 2.042 r_mcangle_it 1.86 r_mcangle_other 1.86 r_angle_refined_deg 1.78 r_mcbond_it 1.196 r_mcbond_other 1.193 r_angle_other_deg 1.043 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1920 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing