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RORgamma (263-509) complexed with SRC2 and Compound 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L0J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2M Ammonium Sulfate, 0.1M Bis-Tris, pH 6.5, 14%(w/v) PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.55 51.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.201 α = 90 b = 62.201 β = 90 c = 154.822 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD 2010-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9792 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 57.72 100 24.19 12.8 15356
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3L0J 2.2 57.72 15356 813 99.87 0.21464 0.21263 0.2131 0.25446 0.2529 RANDOM 17.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.46 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.317 r_dihedral_angle_4_deg 16.834 r_dihedral_angle_3_deg 12.393 r_dihedral_angle_1_deg 4.028 r_scangle_it 1.582 r_scbond_it 0.923 r_angle_refined_deg 0.82 r_angle_other_deg 0.784 r_mcangle_it 0.637 r_mcbond_it 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.317 r_dihedral_angle_4_deg 16.834 r_dihedral_angle_3_deg 12.393 r_dihedral_angle_1_deg 4.028 r_scangle_it 1.582 r_scbond_it 0.923 r_angle_refined_deg 0.82 r_angle_other_deg 0.784 r_mcangle_it 0.637 r_mcbond_it 0.316 r_mcbond_other 0.051 r_chiral_restr 0.043 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1994 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHASER phasing Coot model building