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Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903 in complex with DMASPP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 1.0 M sodium citrate, 0.1 M Imidazole pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.81 56.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.917 α = 90 b = 211.42 β = 90 c = 82.52 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2017-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.0 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 0.052 0.058 0.027 15.3 4.9 90773
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.7 0.336 0.378 0.172 0.924 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.7 25 85679 4670 99.94 0.1177 0.1148 0.1167 0.1709 0.1713 RANDOM 26.238
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 -0.51 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.982 r_sphericity_free 30.101 r_sphericity_bonded 21.872 r_dihedral_angle_4_deg 17.104 r_dihedral_angle_3_deg 14.987 r_rigid_bond_restr 8.708 r_dihedral_angle_1_deg 6.736 r_angle_refined_deg 1.45 r_chiral_restr 0.121 r_gen_planes_refined 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.982 r_sphericity_free 30.101 r_sphericity_bonded 21.872 r_dihedral_angle_4_deg 17.104 r_dihedral_angle_3_deg 14.987 r_rigid_bond_restr 8.708 r_dihedral_angle_1_deg 6.736 r_angle_refined_deg 1.45 r_chiral_restr 0.121 r_gen_planes_refined 0.018 r_bond_refined_d 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4901 Nucleic Acid Atoms Solvent Atoms 747 Heterogen Atoms 34
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SOLVE phasing