5YMY
The structure of the complex between Rpn13 and K48-diUb
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride | 90% H2O/10% D2O | 150 mM | 6.5 | 760 mmHg | 298 | Bruker AvanceIII 600 |
2 | 3D HNCA | 0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride | 90% H2O/10% D2O | 150 mM | 6.5 | 760 mmHg | 298 | Bruker AvanceIII 850 |
3 | 3D HNCB | 0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride | 90% H2O/10% D2O | 150 mM | 6.5 | 760 mmHg | 298 | Bruker AvanceIII 850 |
4 | 3D HCCH-TOCSY | 0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride | 90% H2O/10% D2O | 150 mM | 6.5 | 760 mmHg | 298 | Bruker AvanceIII 850 |
5 | filter NOESY | 150 mM | 6.5 | 760 mmHg | 298 | Bruker AvanceIII 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AvanceIII | 850 |
2 | Bruker | AvanceIII | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 240 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The author states that they used conjoined torsion angle/rigid body simulated annealing refinement based on 19 inter-molecular NOEs (deposited in this entry), the Rpn13 structure from PDB ID 2R2Y, and the Ub structure from 1UBQ. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | Analysis | CCPN | |
4 | peak picking | Analysis | CCPN |