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Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 0.16M Calcium acetate, 14% (w/v) PEG8000, 20% (w/v) glycerol, 0.08M Sodium cacodylate pH6.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.623 α = 90 b = 105.76 β = 90 c = 155.977 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9785 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 52.88 98.54 18.2 12.2 21671
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.26 52.88 21671 1143 98.53 0.19917 0.19697 0.2077 0.24097 0.2453 RANDOM 68.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.46 2.72 -6.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.242 r_dihedral_angle_3_deg 15.929 r_dihedral_angle_4_deg 14.946 r_long_range_B_other 8.855 r_long_range_B_refined 8.849 r_scangle_other 6.604 r_dihedral_angle_1_deg 6.388 r_mcangle_it 4.547 r_mcangle_other 4.546 r_scbond_it 4.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.242 r_dihedral_angle_3_deg 15.929 r_dihedral_angle_4_deg 14.946 r_long_range_B_other 8.855 r_long_range_B_refined 8.849 r_scangle_other 6.604 r_dihedral_angle_1_deg 6.388 r_mcangle_it 4.547 r_mcangle_other 4.546 r_scbond_it 4.225 r_scbond_other 4.225 r_mcbond_it 2.88 r_mcbond_other 2.875 r_angle_refined_deg 1.544 r_angle_other_deg 0.94 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2925 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement xia2 data reduction SCALA data scaling PHASER phasing