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Crystal Structure of KNI-10343 bound Plasmepsin II (PMII) from Plasmodium falciparum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.2 M lithium sulfate, 1.26 M ammonium sulfate, 0.1 M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.71 54.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.08 α = 90 b = 106.08 β = 90 c = 70.88 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2016-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54182
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 100 0.08 16.4 7.3 26651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 100 1.8 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 37.5 25318 1333 99.96 0.16986 0.16789 0.1808 0.20706 0.2194 RANDOM 47.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.52 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.297 r_dihedral_angle_4_deg 22.121 r_dihedral_angle_3_deg 15.412 r_dihedral_angle_1_deg 6.808 r_long_range_B_other 6.735 r_long_range_B_refined 6.734 r_scangle_other 2.646 r_mcangle_it 2.355 r_mcangle_other 2.355 r_angle_refined_deg 1.643
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.297 r_dihedral_angle_4_deg 22.121 r_dihedral_angle_3_deg 15.412 r_dihedral_angle_1_deg 6.808 r_long_range_B_other 6.735 r_long_range_B_refined 6.734 r_scangle_other 2.646 r_mcangle_it 2.355 r_mcangle_other 2.355 r_angle_refined_deg 1.643 r_scbond_it 1.628 r_scbond_other 1.59 r_mcbond_it 1.401 r_mcbond_other 1.401 r_angle_other_deg 0.99 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2600 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing