X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2ETJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62910.15M ammonium sulfate, 0.1M MES, 15%(w/v) PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.6152.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.83α = 90
b = 61.83β = 90
c = 163.26γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-08-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.987SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.257.8299.818.714.316871

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2ETJ2.2501596084999.640.237920.235660.28231RANDOM40.426
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.510.51-1.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.354
r_dihedral_angle_4_deg18.19
r_dihedral_angle_3_deg15.424
r_long_range_B_refined8.398
r_long_range_B_other8.398
r_scangle_other6.411
r_dihedral_angle_1_deg6.032
r_mcangle_it4.927
r_mcangle_other4.925
r_scbond_it4.593
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.354
r_dihedral_angle_4_deg18.19
r_dihedral_angle_3_deg15.424
r_long_range_B_refined8.398
r_long_range_B_other8.398
r_scangle_other6.411
r_dihedral_angle_1_deg6.032
r_mcangle_it4.927
r_mcangle_other4.925
r_scbond_it4.593
r_scbond_other4.592
r_mcbond_it3.665
r_mcbond_other3.651
r_angle_refined_deg1.365
r_angle_other_deg1.033
r_chiral_restr0.086
r_bond_refined_d0.016
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1619
Nucleic Acid Atoms
Solvent Atoms91
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing