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Crystal structure of a collagen-like peptide with interruption sequence
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 0.2 M Zinc acetate dihydrate, 20% w/v Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 1.91 35.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 20.65 α = 90 b = 25.29 β = 93.06 c = 53.98 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9778 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 26.95 99.35 19.5 5.9 26137
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.03 26.95 26137 1308 99.35 0.1076 0.1064 0.1153 0.1299 0.1349 RANDOM 5.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.18 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.86 r_sphericity_free 11.156 r_dihedral_angle_1_deg 7.574 r_sphericity_bonded 4.931 r_angle_refined_deg 2.485 r_rigid_bond_restr 1.849 r_angle_other_deg 1.588 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.86 r_sphericity_free 11.156 r_dihedral_angle_1_deg 7.574 r_sphericity_bonded 4.931 r_angle_refined_deg 2.485 r_rigid_bond_restr 1.849 r_angle_other_deg 1.588 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 522 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 6
Software Software Software Name Purpose MOSFLM data collection Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction ACORN phasing