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Crystal structure of a collagen-like peptide with interruption sequence
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 0.1 M HEPES pH 7.0, 30% v/v Jeffamine, M-600
Crystal Properties Matthews coefficient Solvent content 1.65 25.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 13.75 α = 90 b = 45.44 β = 90.67 c = 77.63 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9778 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 45.44 94.39 6.8 5.8 42193
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.03 45.44 42193 2185 94.39 0.1457 0.1441 0.1525 0.1754 0.181 RANDOM 9.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.38 -0.11 -0.24
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 15.079 r_dihedral_angle_3_deg 12.433 r_dihedral_angle_1_deg 6.85 r_sphericity_bonded 6.707 r_angle_refined_deg 2.553 r_rigid_bond_restr 1.741 r_angle_other_deg 1.515 r_chiral_restr 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.013
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 15.079 r_dihedral_angle_3_deg 12.433 r_dihedral_angle_1_deg 6.85 r_sphericity_bonded 6.707 r_angle_refined_deg 2.553 r_rigid_bond_restr 1.741 r_angle_other_deg 1.515 r_chiral_restr 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1044 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 9
Software Software Software Name Purpose MOSFLM data collection Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data collection ACORN phasing