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Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain NCDV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.6 289 0.1M tri-Sodium citrate dehydrate, 0.5M ammonium sulfate, 1.0M lithium sulfate monohydrate
Crystal Properties Matthews coefficient Solvent content 2.8 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.35 α = 90 b = 48.14 β = 90 c = 122.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 61.38 94.2 0.998 8.8 4 7012
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 61.38 6980 336 93.18 0.2389 0.2372 0.2444 0.2735 0.2793 RANDOM 65.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.35 0.89 -5.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.5 r_dihedral_angle_3_deg 21.787 r_dihedral_angle_4_deg 21.372 r_mcangle_it 6.203 r_mcbond_it 4.042 r_mcbond_other 4.039 r_dihedral_angle_1_deg 3.916 r_angle_other_deg 3.633 r_angle_refined_deg 1.728 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.5 r_dihedral_angle_3_deg 21.787 r_dihedral_angle_4_deg 21.372 r_mcangle_it 6.203 r_mcbond_it 4.042 r_mcbond_other 4.039 r_dihedral_angle_1_deg 3.916 r_angle_other_deg 3.633 r_angle_refined_deg 1.728 r_chiral_restr 0.093 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1395 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction Aimless data scaling PHASER phasing